Publications

Santiago, M.F., A.M.G. Santos, C.P. Inácio, A.C.L. Neto, T.C. Assis, R.P. Neves, V.P. Doyle, J.S. Veloso, W.A.S. Vieira, M.P.S Câmara, D. Laranjeira. 2018. First report of Fusarium lacertarum causing cladode rot in Nopalea cochenellifera in Brazil. Journal of Plant Pathology (https://doi.org/10.1007/s42161-018-0120-0)

Santiago, M.F., A. M. G. Santos, A. C. L. Neto, T. C. Assis, R. P. Neves, V. P. Doyle, J. S. Veloso, W. A. Vieira, M. P. S Câmara, D. Laranjeira. 2018. First report of a member of the Fusarium oxysporum species complex causing cladode rot on Nopalea cochenillifera in Brazil. Plant Disease: https://apsjournals.apsnet.org/doi/abs/10.1094/PDIS-12-17-1977-PDN

Garcia-Aroca, T., Doyle, V.P., Singh, R., Price, T., Collins, K. 2018. First Report of Curvularia Leaf Spot of Corn, Caused by Curvularia lunata, in the United States. Plant Health Progress 19:140-142.

Veloso, J.S., Câmara, M.P.S., Lima, W.G., Michereff, S.J., Doyle, V.P. 2018. Why species delimitation matters for fungal ecology: Colletotrichum diversity on wild and cultivated cashew in Brazil. Fungal Biology 122:677-691.

Vieira, W.A.S., W.G. Lima, E.S. Nascimento, S.J. Michereff, M.P. S. Câmara, V.P. Doyle. 2018. The impact of phenotypic and molecular data on the inference of Colleotrichum diversity associated with Musa. Mycologia 16:1-23. doi: 10.1080/00275514.2017.1418577.

Xavier-Mis, D. M., C. Overstreet, E. C. McGawley and V. P. Doyle. 2018 Susceptibility of grain sorghum cultivars to Meloidogyne incognita in Louisiana, U.S.A. Nematropica 47:86-98.

Sharma, S., A. Z. Zaccaron, J.B. Ridenour, Tom Allen, Kassie Conner, Vinson P. Doyle, Trey Price, Edward Sikora, Raghuwinder Singh, Terry Spurlock, Maria Tomaso-Peterson, Tessie Wilkerson, and Burt H. Bluhm. 2018. Draft genome sequence of Xylaria sp., the causal agent of taproot decline of soybean in Southern United States. Data in Brief 17:129–133.

Reid, C.S.V.P. Doyle, R. Carter, Y. Vargas-Rodriguea, L.E. Urbatsch. 2017. Molecular systematics of targeted flat sedges (Cyperus, Cyperaceae) of the AmericasPlant Ecology and Evolution 150 (3): 343–357, 2017 https://doi.org/10.5091/plecevo.2017.1262

Cavalcante, G.R.S., W.A.S. Vieira, S.J. Michereff, V.P. Doyle, M.P.S. Câmara. 2017. First report of Anthracnose caused by Colletotrichum sichuanensis on Phaseolus lunatus in Brazil. Plant Disease https://doi.org/10.1094/PDIS-07-17-0963-PDN

Singh, R. and Doyle, V.P. 2017. Boxwood dieback caused by Colletotrichum theobromicola: a diagnostic guide. Plant Health Progress 18:174-180.

Albu, S., S. Sandeep, B. Bluhm, P. Price, R. Schneider, V.P. Doyle. 2017. Draft Genome Sequence of Cercospora cf. sigesbeckiae, a causal agent of Cercospora Leaf Blight on soybean. Genome Announcements 2017 Sep; 5(36): e00708-17.

Allen, T., B. Bluhm, K. Conner, V.P. Doyle, T. Price, E. Sikora, R. Singh, T. Spurlock, M. Tomaso-Peterson, T. Wilkerson. 2017. First Report of Taproot Decline of Soybean, Caused by a Species of Xylaria, in the Southern United StatesPlant Health Progress 18:35-40.

Vieira, W.A.S., W.G. Lima, E.S. Nascimento, S.J. Michereff, A. Reis, V.P. Doyle, M.P.S. Câmara2017. Thiophanate-methyl Resistance and Fitness Components of Colletotrichum musae Isolates From Banana in BrazilPlant Disease 101:1659-1665.

Albu S., P.P. Price, V.P. Doyle, B. Padgett, R.W. Schneider. 2016. The G143A Mutation is Responsible for Strobilurin Fungicide Resistance in Cercospora Leaf Blight and Purple Seed Stain Pathogens of Louisiana Soybean. Plant Health Progress, 17(3): 197.

Albu, S., R.W. Schneider, P.P. Price, V.P. Doyle. 2016. Cercospora cf. flagellaris and C. cf. sigesbeckiae are associated with Cercospora leaf blight and purple seed stain on soybean in North America. Phytopathology, 106(11): 1376-1385. http://dx.doi.org/10.1094/PHYTO-12-15-0332-R

Doyle, V.P., R.E. Young*, G.J.P. Naylor, J.M. Brown. (2015Can we identify genes with increased phylogenetic reliability. Systematic Biology, 64(5):824-837. doi: 10.1093/sysbio/syv041 Access the recommendation on F1000Prime

Doyle, V.P., J. J. Andersen, B. J. Nelson, M. L. Metzker, J. M. Brown. (2014Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster. Molecular Phylogenetics and Evolution, 75:126-137.

Doyle, V.P., P.V. Oudemans, S.A. Rehner, A. Litt. (2013) Habitat and Host Indicate Lineage Identity in Colletotrichum gloeosporioides s.l. from Wild and Agricultural Landscapes in North AmericaPLoS ONE 8(5): e62394. doi:10.1371/journal.pone.0062394.

Doyle, V.P. (2012Colletotrichum gloeosporioides s.l. in North America: sex, host, and habitat-mediated diversity in a plant-associated ascomycete. Ph.D. Dissertation. The City University of New York.

Wheeler, Q.D., S. Knapp, D. W. Stevenson, J. Stevenson, S. D. Blum, B. M. Boom, G. G. Borisy, J. L. Buizer, M. R. De Carvalho, A. Cibrian, M. J. Donoghue, V.P. Doyle, E. M. Gerson, C. H. Graham, P. Graves, S. J. Graves, R. P. Guralnick, A. L. Hamilton, J. Hanken, W. Law,D. L. Lipscomb, T. E. Lovejoy, H. Miller, J. S. Miller, S. Naeem, M. J. Novacek, L. M. Page, N. I. Platnick, H. Porter-Morgan, P. H. Raven, M. A. Solis, A. G. Valdecasas, S. Van Der Leeuw, A. Vasco, N. Vermeulen, J. Vogel, R. L. Walls, E. O. Wilson, and J. B. Woolley. (2012)  Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity. Systematics and Biodiversity, 10(1):1-20.
Press: https://asunews.asu.edu/20120402_mappingbiosphere

Constantelos, C., V.P. Doyle, A. Litt, P.V. Oudemans. (2011First Report of Gliocephalotrichum bulbilium causing cranberry fruit rot in New Jersey and MassachusettsPlant Disease, 95(5):618.

Technical Reports

Kshatriya, P., V.P. Doyle, B.J. Nelson, X. Qin, J. Andersen, J.M Brown, and M.L. Metzker. 2014. Progress towards developing the ‘pathogen toolkit’. National Criminal Justice Reference Service, 5/2014. https://www.ncjrs.gov/App/Publications/abstract.aspx?ID=269044

Presentations/Abstracts

**Garcia-Aroca, T., Price, P., Tomaso-Peterson, M., Spurlock, T., Faske, T. R., Bluhm, B., Conner, K., Sikora, E. J., Guyer, R., Kelly, H., Allen, T.W., and Doyle, V.P. (2018). Taproot Decline of Soybean is Caused by an Undescribed Species in the Genus Xylaria. Proceedings of the 45th Annual Meeting of the Southern Soybean Disease Workers, p. 16.

*Searight, J. C.,*Solórzano, J., Doyle, V.P. (2018). Characterization of Secondary Metabolite Production Among Cercospora Species Associated with Cercospora Leaf Blight. 11th International Mycological Congress.

**Garcia-Aroca, T., Price, P., Tomaso-Peterson, M., Spurlock, T., Faske, T., Bluhm, B., Conner, K., Sikora, E., Guyer, R., Kelly, H., Allen, T., and Doyle, VP. (2018). A novel lineage of Xylaria is responsible for taproot decline of soybean in the southern United States. 11th International Mycological Congress.

Doyle, V.P., *Baer, C., Gazis, R., Rehner, S.A. (2018). Colletotrichum gloeosporioides s.l.: a multilocus species tree and a flexible metabarcoding strategy for species identification and diversity exploration. 11th International Mycological Congress.

Doyle, V. P., **Carver, Z.A., Price, P. (2018). Multiple lines of evidence suggest alternative hosts are involved in the development of Cercospora Leaf Blight of soybean in Louisiana. 11th International Mycological Congress.

*Tonry, H. T., Carver, Z.A., Albu, S., Hutchins, H. M., Doyle, V.P. (2018). Developing the tools to monitor populations of Cercospora species associated with Cercospora Leaf Blight on soybean. 11th International Mycological Congress.

Guyer, R., H. Young-Kelly, S. Pate, T. Garcia Aroca**, V. P. Doyle, T. Price. (2018). First Report of Taproot Decline caused by Xylaria sp. on Soybean in Tennessee. International Congress of Plant Pathology

Hudson, O., Buchholz, M., Doyle, V.P., Sundue, M. (2018) Life on Leaves: New Species and Host Plant Fidelity in the Epibiotic Fungus Acrospermum. University of Vermont Undergraduate Research Symposium

*Searight, J. C.,**Solórzano, J., Doyle, V.P. (2018). Cercosporin Quantification in Cercospora Species Associated with Cercospora Leaf Blight and Purple Seed Stain. LSU Discover Day Undergraduate Research Symposium

*Tonry, H.T., **Carver, Z.A., Hutchins, H.H., Doyle, V.P. (2018). Developing Diagnostic Tools for the Rapid Identification of Cercospora Species on Soybean. LSU Discover Day Undergraduate Research Symposium 2018.

*Tonry, H.T., **Carver, Z.A. Hutchins, H.H., and Doyle, V.P. (2018). Developing Diagnostic Tools for the Rapid Identification of Cercospora Species on Soybean. College of Agriculture Undergraduate Research Grants Undergraduate Poster Competition 2018.

Singh, R.S., V.P. Doyle, K. Conner, M. Munster, M. Williamson, J. Williams-Woodward. (2018). Current status and impact of boxwood dieback caused by Colletotrichum theobromicola in the United States. American Phytopathological Society – Southern Division Meeting

Vieira, W.A.S.**, J. Veloso**, A. da Silva, M.P.S. Camara, V. P. Doyle. (2017). Impacto de meios de cultura na discriminacao de especies do complex Colletotrichum gloeosporioides. XVII Jornada de Ensino, Pesquisa e Extensão (JEPEX)

Vieira, W.A.S.**, J. Veloso**, W.J. da Silva Jr., M.P.S. Camara, V. P. Doyle. (2017). Filtragem automatizada de alinhamento de sequencias genicas de Colletotrichum spp. XVII Jornada de Ensino, Pesquisa e Extensão (JEPEX)

Vieira, W.A.S.**, J. Veloso**, P.A. Bezerra, M.P.S. Camara, V. P. Doyle. (2017). Primers especificos para deteccao de Colletotrichum musae.  XVII Jornada de Ensino, Pesquisa e Extensão (JEPEX)

Allen, T., K. Conner, V.P. Doyle, T. Faske, T. Price, E. Sikora, R. Singh, T. Spurlock, M. Tomaso-Peterson, T. Wilkerson. (2017). Taproot decline: an emerging disease of soybean in the southern United States. World Soybean Conference

**Carver, Z.A., Price, P.P, Doyle, V.P. (2017) Cercospora community composition associated with Cercospora leaf blight changes across developmental stages and is geographically dependent. Mycological Society of America Annual Meeting

*Tonry, H. T., **Carver, Z.A., *Hutchins, H.H., Doyle, V.P. (2017). Developing diagnostic tools for the rapid identification of Cercospora species on soybean. LSU Discover Day Undergraduate Research Symposium

Carver, Z.A., Doyle, V.P. (2017). Refining Estimates of the Distribution of Plant-Associated Fungi Using Host-Fungus Association and Plant Distribution Data. APS-Southern Division

Allen, T., B. Bluhm, K. Conner, V.P. Doyle, T. Price, E. Sikora, R. Singh, T. Spurlock, M. Tomaso-Peterson, T. Wilkerson. (2017). Taproot decline: first report of a previously unknown disease of soybean. APS-Southern Division

Koch, J.M., Doyle, V.P., Smith, B.T. (2016). A Spatially Explicit Test of Neotropical Diversification Models. Evolution

Coghill, L.M., Doyle, V.P., Wishingrad, V., Thomson, R.C.,Brown, J.M. (2016) Big Data and Outlier Loci – A Cautionary Tale with Genome-Scale Phylogenetic Data. Evolution

Rehner, S.A., Kepler, R.M., Doyle, V.P., Bushley, K.E. (2016). Going to extremes: contrasting population genetic structures among cryptic species of the entomopathogen Beauveria bassiana. Mycological Society of America

*Hutchins, H., **Veloso, J.S., Doyle, V.P. (2016) Characterizing the diversity of plant-associated Colletotrichum species in Louisiana. Mycological Society of America

*Baer, C., **Veloso, J.S., *Hutchins, H., Câmara, M.P.S., Rehner, S.A., Doyle, V.P. (2016) Examining phylogenetic signal in a suite of novel intergenic sequence markers for Colletotrichum systematics. Mycological Society of America

Doyle, V.P., Faircloth, B.C. (2015). The utility of ultraconserved elements for inferring phylogenies in the Fungi. Mycological Society of America

**Vieira, W.A.S., Lima, W.G., Nascimento,E.S., Michereff,S.J., Reis, A., Camara, M.P. S., Doyle, V.P. (2015). Colletotrichum species associated with banana anthracnose in Brazil. Mycological Society of America

** Albu, S., Price, P., Doyle, V.P., and Schneider, R.(2015). Molecular Characterization of the G143A Mutation Leading to QoI Fungicide Resistance Among Fungal Pathogens Causing Cercospora Leaf Blight and Purple Seed Stain on Soybean. Proceedings of the Southern Soybean Disease Workers.

Doyle, V.P., *Young, R., Naylor, G.J.P., Brown, J.M. (2014) Approaches to reducing spurious signal in phylogenomic datasets. Evolution

**Albu, S. Price, P. Doyle, V.P., Schneider, R.(2014). Is Cercospora kikuchii the causal agent of Cercospora Leaf blight (CLB) and Purple Seed Stain (PSS) in the Gulf South? American Phytopathological Society Meeting.

**Albu, S., Price, P., Doyle, V.P., Schneider, R.(2014). Cryptic diversity within Cercospora kikuchii on soybean in Louisiana. American Phytopathological Society – Southern Division Meeting

**Albu, S. Price, P. Doyle, V.P., Schneider, R. (2014). A molecular phylogenetic revision of Cercospora kikuchii. Proceedings of the Southern Soybean Disease Workers.

*Young, R., V.P. Doyle, G.J.P Naylor, J.M. Brown. (2013) Reducing Systematic Error by Limiting Phylogenetic Inference to Clock-like Genes. Evolution.

*Young, R., V.P. Doyle, G.J.P Naylor, J.M. Brown. (2013) Reducing Systematic Error by Limiting Phylogenetic Inference to Clock-like Genes. Society for Molecular Biology and Evolution.

Sundue, M., V.P. Doyle, T. Ranker. (2011)  Insights into the multiple origins of symbioses between Acrospermum and polypod ferns: evidence from plant and fungal sequence data. International Botanical Congress.

Doyle, V. P., P.V. Oudemans, S.A. Rehner, A. Litt. (2011) Diversity and population genetics of the Colletotrichum gloeosporioides complex in North America: understanding dispersal patterns in agricultural and wild populations. Inoculum 62(3): 17 [Supplement to Mycologia].

Doyle, V.P., S.A. Rehner, P.V. Oudemans, A. Litt. (2010) Phylogenetic diversity in the Colletotrichum gloeosporioides complex infecting cranberry. Inoculum 61(4): 48 [Supplement to Mycologia].

Doyle, V.P., M. Sundue, G.J. Samuels. (2008). Evaluating host specificity of epibiotic Acrospermum on neotropical polygrammoid ferns. Inoculum 59(4):28 [Supplement to Mycologia].

*Undergraduate mentee

**Graduate mentee

Corresponding author

Other

Doyle, V.P. (2011The Study of Cryptic Diversity: From Field to Lab

Doyle, V.P. (2007). Unforeseen Foray for Unseen Fungi. Spores Illustrated Summer Issue [Publication of the Connecticut-Westchester Mycological Association]

Constance, A., V.P. Doyle, C. Hinchliff, R. Sheedy. (2003A Preliminary Floristic Survery of Glacial Heritage Preserve, Thurston County, Washington [Undergraduate Research]

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