Publications

Vieira, W.A.S.**, W.G. Lima, E.S. Nascimento, S.J. Michereff, M.P. S. Câmara, V.P. Doyle. (In Preparation –  Mycologia) Exploring data quality in Colletotrichum systematics with a case study on Musa-associated species.

Allen, T., B. Bluhm, K. Conner, V.P. Doyle, T. Price, E. Sikora, R. Singh, T. Spurlock, M. Tomaso-Peterson, T. Wilkerson (Submitted) First Report of Taproot Decline of Soybean, Caused by a Species of Xylaria, in the Southern United States. Plant Health Progress

Reid, C.S., V.P. Doyle, R. Carter, Y. Vargas-Rodriguea, L.E. Urbatsch (Accepted – In Revision) An exploratory multi-locus phylogenetic analysis of Cyperus (Cyperaceae), with emphasis on New World taxa. Plant Ecology and Evolution

Vieira, W.A.S.**, W.G. Lima, E.S. Nascimento, S.J. Michereff, A. Reis, V.P. Doyle, M.P.S. Câmara. (Accepted – In Revision) Thiophanate-methyl Resistance and Fitness Components of Colletotrichum musae Isolates From Banana in Brazil. Plant Disease

Albu S., P.P. Price, V.P. Doyle, B. Padgett, R.W. Schneider (2016). The G143A Mutation is Responsible for Strobilurin Fungicide Resistance in Cercospora Leaf Blight and Purple Seed Stain Pathogens of Louisiana Soybean. Plant Health Progress, 17(3): 197.

Albu, S.**, R.W. Schneider, P.P. Price, V.P. Doyle. (2016) Cercospora cf. flagellaris and C. cf. sigesbeckiae are associated with Cercospora leaf blight and purple seed stain on soybean in North America. Phytopathology, http://dx.doi.org/10.1094/PHYTO-12-15-0332-R

 

Doyle, V.P., R.E. Young*, G.J.P. Naylor, J.M. Brown. (2015) Can we identify genes with increased phylogenetic reliability. Systematic Biology, 64(5):824-837. doi: 10.1093/sysbio/syv041 Access the recommendation on F1000Prime

Doyle, V.P., J. J. Andersen, B. J. Nelson, M. L. Metzker, J. M. Brown. (2014Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster. Molecular Phylogenetics and Evolution, 75:126-137.

Doyle, V.P., P.V. Oudemans, S.A. Rehner, A. Litt. (2013) Habitat and Host Indicate Lineage Identity in Colletotrichum gloeosporioides s.l. from Wild and Agricultural Landscapes in North AmericaPLoS ONE 8(5): e62394. doi:10.1371/journal.pone.0062394.

Doyle, V.P. (2012Colletotrichum gloeosporioides s.l. in North America: sex, host, and habitat-mediated diversity in a plant-associated ascomycete. Ph.D. Dissertation. The City University of New York.

Wheeler, Q.D., S. Knapp, D. W. Stevenson, J. Stevenson, S. D. Blum, B. M. Boom, G. G. Borisy, J. L. Buizer, M. R. De Carvalho, A. Cibrian, M. J. Donoghue, V.P. Doyle, E. M. Gerson, C. H. Graham, P. Graves, S. J. Graves, R. P. Guralnick, A. L. Hamilton, J. Hanken, W. Law,D. L. Lipscomb, T. E. Lovejoy, H. Miller, J. S. Miller, S. Naeem, M. J. Novacek, L. M. Page, N. I. Platnick, H. Porter-Morgan, P. H. Raven, M. A. Solis, A. G. Valdecasas, S. Van Der Leeuw, A. Vasco, N. Vermeulen, J. Vogel, R. L. Walls, E. O. Wilson, and J. B. Woolley. (2012)  Mapping the biosphere: exploring species to understand the origin, organization and sustainability of biodiversity. Systematics and Biodiversity, 10(1):1-20.
Press: https://asunews.asu.edu/20120402_mappingbiosphere

Constantelos, C., V.P. Doyle, A. Litt, P.V. Oudemans. (2011First Report of Gliocephalotrichum bulbilium causing cranberry fruit rot in New Jersey and MassachusettsPlant Disease, 95(5):618.

Technical Reports

Kshatriya, P., V.P. Doyle, B.J. Nelson, X. Qin, J. Andersen, J.M Brown, and M.L. Metzker. 2014. Progress towards developing the ‘pathogen toolkit’. National Criminal Justice Reference Service, 5/2014. https://www.ncjrs.gov/App/Publications/abstract.aspx?ID=269044

Presentations/Abstracts

Carver, Z.A., Doyle, V.P. (2017). Refining Estimates of the Distribution of Plant-Associated Fungi Using Host-Fungus Association and Plant Distribution Data. APS-Southern Division

Allen, T., B. Bluhm, K. Conner, V.P. Doyle, T. Price, E. Sikora, R. Singh, T. Spurlock, M. Tomaso-Peterson, T. Wilkerson. (2017). Taproot decline: first report of a previously unknown disease of soybean. APS-Southern Division

Koch, J.M., Doyle, V.P., Smith, B.T. (2016). A Spatially Explicit Test of Neotropical Diversification Models. Evolution

Coghill, L.M., Doyle, V.P., Wishingrad, V., Thomson, R.C.,Brown, J.M. (2016) Big Data and Outlier Loci – A Cautionary Tale with Genome-Scale Phylogenetic Data. Evolution

Rehner, S.A., Kepler, R.M., Doyle, V.P., Bushley, K.E. (2016). Going to extremes: contrasting population genetic structures among cryptic species of the entomopathogen Beauveria bassiana. Mycological Society of America

*Hutchins, H., **Veloso, J.S., Doyle, V.P. (2016) Characterizing the diversity of plant-associated Colletotrichum species in Louisiana. Mycological Society of America

*Baer, C., **Veloso, J.S., *Hutchins, H., Câmara, M.P.S., Rehner, S.A., Doyle, V.P. (2016) Examining phylogenetic signal in a suite of novel intergenic sequence markers for Colletotrichum systematics. Mycological Society of America

Doyle, V.P., Faircloth, B.C. (2015). The utility of ultraconserved elements for inferring phylogenies in the Fungi. Mycological Society of America

**Vieira, W.A.S., Lima, W.G., Nascimento,E.S., Michereff,S.J., Reis, A., Camara, M.P. S., Doyle, V.P. (2015). Colletotrichum species associated with banana anthracnose in Brazil. Mycological Society of America

** Albu, S., Price, P., Doyle, V.P., and Schneider, R.(2015). Molecular Characterization of the G143A Mutation Leading to QoI Fungicide Resistance Among Fungal Pathogens Causing Cercospora Leaf Blight and Purple Seed Stain on Soybean. Proceedings of the Southern Soybean Disease Workers.

Doyle, V.P., *Young, R., Naylor, G.J.P., Brown, J.M. (2014) Approaches to reducing spurious signal in phylogenomic datasets. Evolution

**Albu, S. Price, P. Doyle, V.P., Schneider, R.(2014). Is Cercospora kikuchii the causal agent of Cercospora Leaf blight (CLB) and Purple Seed Stain (PSS) in the Gulf South? American Phytopathological Society Meeting.

**Albu, S., Price, P., Doyle, V.P., Schneider, R.(2014). Cryptic diversity within Cercospora kikuchii on soybean in Louisiana. American Phytopathological Society – Southern Division Meeting

**Albu, S. Price, P. Doyle, V.P., Schneider, R. (2014). A molecular phylogenetic revision of Cercospora kikuchii. Proceedings of the Southern Soybean Disease Workers.

*Young, R., V.P. Doyle, G.J.P Naylor, J.M. Brown. (2013) Reducing Systematic Error by Limiting Phylogenetic Inference to Clock-like Genes. Evolution.

*Young, R., V.P. Doyle, G.J.P Naylor, J.M. Brown. (2013) Reducing Systematic Error by Limiting Phylogenetic Inference to Clock-like Genes. Society for Molecular Biology and Evolution.

Sundue, M., V.P. Doyle, T. Ranker. (2011)  Insights into the multiple origins of symbioses between Acrospermum and polypod ferns: evidence from plant and fungal sequence data. International Botanical Congress.

Doyle, V. P., P.V. Oudemans, S.A. Rehner, A. Litt. (2011) Diversity and population genetics of the Colletotrichum gloeosporioides complex in North America: understanding dispersal patterns in agricultural and wild populations. Inoculum 62(3): 17 [Supplement to Mycologia].

Doyle, V.P., S.A. Rehner, P.V. Oudemans, A. Litt. (2010) Phylogenetic diversity in the Colletotrichum gloeosporioides complex infecting cranberry. Inoculum 61(4): 48 [Supplement to Mycologia].

Doyle, V.P., M. Sundue, G.J. Samuels. (2008). Evaluating host specificity of epibiotic Acrospermum on neotropical polygrammoid ferns. Inoculum 59(4):28 [Supplement to Mycologia].

*Undergraduate mentee

**Graduate mentee

Corresponding author

Other

Doyle, V.P. (2011The Study of Cryptic Diversity: From Field to Lab

Doyle, V.P. (2007). Unforeseen Foray for Unseen Fungi. Spores Illustrated Summer Issue [Publication of the Connecticut-Westchester Mycological Association]

Constance, A., V.P. Doyle, C. Hinchliff, R. Sheedy. (2003A Preliminary Floristic Survery of Glacial Heritage Preserve, Thurston County, Washington [Undergraduate Research]

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